scdori.load_gtf

Contents

scdori.load_gtf#

scdori.load_gtf(gtf_path)#

Load gene coordinates from a GTF file into a pandas DataFrame using gtfparse.

Parameters:

gtf_path (pathlib.Path) – The path to the GTF file (optionally gzipped).

Return type:

DataFrame

Returns:

pd.DataFrame A DataFrame containing parsed GTF records. The columns correspond to GTF fields such as “gene_name”, “gene_type”, “start”, “end”, etc.